Mutation detail:
Mutation site | S203T |
Virus | Influenzavirus A H1N1 |
Mutation level ![]() |
Amino acid Level |
Gene/protein/region type | HA |
Gene ID | 23308115 |
Country | Spain |
Mutation type ![]() |
nonsynonymous mutation |
Genotype/subtype/clade | clade 7 |
Sample ![]() |
Human |
Variants | - |
Viral reference sequence | NC_026433.1 |
Drug/antibody/vaccine | - |
Transmissibility ![]() |
- |
Transmission mechanism | - |
Pathogenicity ![]() |
- |
Pathogenicity mechanism | - |
Immune escape mutation | - |
Immune escape mechanism | - |
RT-PCR primers probes | - |
Protein detail:
Protein name | Hemagglutinin |
Uniprot protein ID | C3W627 |
Protein length | 566 amino acids |
Protein description | The HA protein is translated as an uncleaved HA0 precursor protein, folded as a trimer, and glycosylated and acylated. The HA protein binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization either through clathrin-dependent endocytosis or through clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore. |
Literature information:
Pubmed ID | 26939538 |
Clinical information | No |
Disease | - |
Published year | 2016 |
Journal | Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases |
Title | Virological surveillance of influenza and other respiratory viruses during six consecutive seasons from 2006 to 2012 in Catalonia, Spain |
Author | A Antón , M A Marcos, N Torner , R Isanta , M Camps |
Evidence | Phylogenetic analyses (HA1 and NA) of 121/123 A(H1N1)pdm09 strains (Table 2; and Supplementary material, Fig. S3), showed that 116 strains were carrying the genetic features (S203T in HA1, and V106I and N248D in NA) of strains belonging to the clade 7 described by Nelson et al. |