AVM v1, released 02-OCT-22

A manually curated database of aerosol-transmitted virus mutations, human diseases, and drugs

Mutation detail:


Mutation site F220I
Virus SARS-CoV-2
Mutation level Amino acid level
Gene/protein/region type S
Gene ID 43740568
Country USA
Mutation type nonsynonymous mutation
Genotype/subtype/clade 20C
Sample Human
Variants -
Viral reference sequence NC_045512
Drug/antibody/vaccine BNT162b2 vaccine breakthrough
Transmissibility -
Transmission mechanism -
Pathogenicity -
Pathogenicity mechanism -
Immune escape mutation Yes
Immune escape mechanism -
RT-PCR primers probes -

Protein detail:


Protein name Spike glycoprotein
Uniprot protein ID P0DTC2
Protein length 1273 amino acids
Protein description Spike protein is one of the structural proteins of SARS-CoV-2. The monomeric protein consists of one large ectodomain, a single-pass transmembrane anchor, and a short intracellular tail at C-terminus. It encompasses 22 glycosylation sites. S protein cleaves into two subunits namely S1 and S2 following receptor recognition. Receptor Binding Domain (RBD) in S1 subunit plays a major role in ACE2 receptor binding.

Literature information:


Pubmed ID 33882219
Clinical information No
Disease -
Published year 2021
Journal NEW ENGLAND JOURNAL OF MEDICINE
Title Vaccine Breakthrough Infections with SARS-CoV-2 Variants
Author Ezgi Hacisuleyman,Caryn Hale,Yuhki Saito,Nathalie E. Blachere,Marissa Bergh
Evidence Table1