Mutation detail:
| Mutation site | R626K |
| Virus | Influenzavirus A H1N1 |
Mutation level  |
Amino acid Level |
| Gene/protein/region type | PA |
| Gene ID | 23308128 |
| Country | - |
| Mutation type |
nonsynonymous mutation |
| Genotype/subtype/clade | clade2,7 |
| Sample |
cell line |
| Variants | - |
| Viral reference sequence | CY041835.1 |
| Drug/antibody/vaccine | - |
| Transmissibility |
- |
| Transmission mechanism | - |
| Pathogenicity |
- |
| Pathogenicity mechanism | - |
| Immune escape mutation | - |
| Immune escape mechanism | - |
| RT-PCR primers probes | - |
Protein detail:
| Protein name | Polymerase PA |
| Uniprot protein ID | C3W5X6 |
| Protein length | 716 amino acids |
| Protein description | PA Plays an essential role in viral RNA transcription and replication by forming the heterotrimeric polymerase complex together with PB1 and PB2 subunits. The complex transcribes viral mRNAs by using a unique mechanism called cap-snatching. It consists in the hijacking and cleavage of host capped pre-mRNAs. These short capped RNAs are then used as primers for viral mRNAs. The PB2 subunit is responsible for the binding of the 5' cap of cellular pre-mRNAs which are subsequently cleaved after 10-13 nucleotides by the PA subunit that carries the endonuclease activity. |
Literature information:
| Pubmed ID | 21288815 |
| Clinical information | No |
| Disease | - |
| Published year | 2011 |
| Journal | The Journal of Infectious Diseases |
| Title | Deep Sequencing Reveals Mixed Infection with 2009 Pandemic Influenza A (H1N1) Virus Strains and the Emergence of Oseltamivir Resistance |
| Author | Elodie Ghedin,Jennifer Laplante,Jay DePasse,David E. Wentworth,Roberto P. Santos |
| Evidence | Sanger consensus sequence assemblies of both samples also revealed a unique set of residues, compared with the pandemic H1N1/2009 virus strains available in public databases: specifically, a D199N mutation in the NA, a N55D mutation in the HA, and a R626K mutation in the polymerase. |