Mutation detail:
| Mutation site | N61del/V62del/T63del/W64del/F65del/H66del/A67del/I68del/H69del/V70delS71del/G72del/T73del |
| Virus | SARS-CoV-2 |
Mutation level  |
Amino acid level |
| Gene/protein/region type | S |
| Gene ID | 43740568 |
| Country | UK |
| Mutation type |
nonsynonymous mutation |
| Genotype/subtype/clade | - |
| Sample |
Human |
| Variants | - |
| Viral reference sequence | NC_045512.2 |
| Drug/antibody/vaccine | - |
| Transmissibility |
- |
| Transmission mechanism | - |
| Pathogenicity |
- |
| Pathogenicity mechanism | - |
| Immune escape mutation | - |
| Immune escape mechanism | - |
| RT-PCR primers probes | - |
Protein detail:
| Protein name | Spike glycoprotein |
| Uniprot protein ID | P0DTC2 |
| Protein length | 1273 amino acids |
| Protein description | Spike protein is one of the structural proteins of SARS-CoV-2. The monomeric protein consists of one large ectodomain, a single-pass transmembrane anchor, and a short intracellular tail at C-terminus. It encompasses 22 glycosylation sites. S protein cleaves into two subunits namely S1 and S2 following receptor recognition. Receptor Binding Domain (RBD) in S1 subunit plays a major role in ACE2 receptor binding. |
Literature information:
| Pubmed ID | 32954666 |
| Clinical information | No |
| Disease | - |
| Published year | 2020 |
| Journal | Transboundary and Emerging Diseases |
| Title | Transboundary and Emerging Diseases |
| Author | Mohammad Shaminur Rahman, Mohammad Rafiul Islam, Mohammad Nazmul Hoque, Abu Sayed Mohammad Rubayet Ul Alam, Masuda Akther |
| Evidence | Besides site- specific mutations, our analysis revealed 17 in- frame deletions of ranged nucleotides across the SARS-CoV- 2 S protein sequences originating from different countries worldwide (Table 2, Data S2). |