AVM v1, released 02-OCT-22

A manually curated database of aerosol-transmitted virus mutations, human diseases, and drugs

Mutation detail:


Mutation site T98K
Virus Influenzavirus A H1N1
Mutation level Amino acid Level
Gene/protein/region type NEP
Gene ID 23308112
Country Kenya
Mutation type nonsynonymous mutation
Genotype/subtype/clade -
Sample Human
Variants -
Viral reference sequence NC_026432.1
Drug/antibody/vaccine -
Transmissibility -
Transmission mechanism -
Pathogenicity -
Pathogenicity mechanism -
Immune escape mutation -
Immune escape mechanism -
RT-PCR primers probes -

Protein detail:


Protein name Nuclear Export Protein
Uniprot protein ID C3W610
Protein length 121 amino acids
Protein description NEP can be divided into a protease-sensitive N-terminal domain (amino acids 1-53) and a protease-resistant C-terminal domain (amino acids 54-121), the crystal structure of which has been solved. NEP mediates the nuclear export of encapsidated genomic RNAs (ribonucleoproteins, RNPs). Acts as an adapter between viral RNPs complexes and the nuclear export machinery of the cell. Possesses no intrinsic RNA-binding activity, but includes a C-terminal M1-binding domain. This domain is believed to allow recognition of RNPs to which the M1 protein is bound. Because the M1 protein is not available in large quantities until the later stages of infection, such an indirect recognition mechanism probably ensures that genomic RNPs are not exported from the nucleus before sufficient quantities of viral mRNA and progeny genomic RNA have been synthesized. Furthermore, the RNPs enters the cytoplasm only when they have associated with the M1 protein that is necessary to guide them to the plasma membrane. May down-regulate viral RNA synthesis when overproduced.

Literature information:


Pubmed ID 21537996
Clinical information No
Disease -
Published year 2011
Journal Virus Genes
Title Amino acid sequence analysis and identification of mutations in the NS gene of 2009 influenza A (H1N1) isolates from Kenya
Author Gachara George,Symekher Samuel,Mbithi John,Simwa James,Ng'ayo Musa
Evidence Table1