AVM v1, released 02-OCT-22

A manually curated database of aerosol-transmitted virus mutations, human diseases, and drugs

Mutation detail:


Mutation site S203T
Virus Influenzavirus A H1N1
Mutation level Amino acid Level
Gene/protein/region type HA
Gene ID 23308115
Country USA,Spain
Mutation type nonsynonymous mutation
Genotype/subtype/clade clade 7
Sample cell line
Variants -
Viral reference sequence FJ966082.1
Drug/antibody/vaccine oseltamivir resistant
Transmissibility -
Transmission mechanism -
Pathogenicity -
Pathogenicity mechanism -
Immune escape mutation -
Immune escape mechanism -
RT-PCR primers probes -

Protein detail:


Protein name Hemagglutinin
Uniprot protein ID C3W627
Protein length 566 amino acids
Protein description The HA protein is translated as an uncleaved HA0 precursor protein, folded as a trimer, and glycosylated and acylated. The HA protein binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization either through clathrin-dependent endocytosis or through clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.

Literature information:


Pubmed ID 23116787
Clinical information No
Disease -
Published year 2012
Journal Enfermedades Infecciosas y Microbiologia Clinica
Title Influenza A(H1N1)pdm09 virus: viral characteristics and genetic evolution
Author Andres Antona, Francisco Pozoc, Jordi Niubod, Inmaculada Casasc and Tomas Pumarola
Evidence During the 2010-2011 influenza season, an additional genetic group characterized by amino acid substitutions E172K, S203T, K308E in HA, often with V47I mutation, was identified in Spain,22 indicating the importance of performing regional influenza surveillance.